Variant report

Variant	rs16835615
Chromosome Location	chr1:193580811-193580812
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16835664	1.00[AMR][1000 genomes]
rs16835669	1.00[AMR][1000 genomes]
rs16835672	1.00[AMR][1000 genomes]
rs16835674	1.00[AMR][1000 genomes]
rs16835693	1.00[AMR][1000 genomes]
rs16835723	1.00[AMR][1000 genomes]
rs16835738	1.00[AMR][1000 genomes]
rs16835741	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832170	chr1:193426455-193596182	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193579000-193583400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:193579400-193583600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:193579600-193584600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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