Variant report

Variant	rs16836112
Chromosome Location	chr1:194009339-194009340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57718573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57890467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062794	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194007800-194010200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr1:194007800-194010600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr1:194008000-194009400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:194008000-194010200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:194008200-194010200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:194008200-194010200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:194008200-194010600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:194008400-194010000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr1:194008600-194009400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:194008600-194009400	Enhancers	NHEK	skin
11	chr1:194009000-194013000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:194009200-194010000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:194009200-194010600	Enhancers	Primary T cells from cord blood	blood
14	chr1:194009200-194010600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr1:194009200-194013800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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