Variant report

Variant	rs16836450
Chromosome Location	chr2:205506924-205506925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10177328	0.91[ASN][1000 genomes]
rs10208062	0.89[ASN][1000 genomes]
rs10432519	0.88[ASN][1000 genomes]
rs10490269	0.91[ASN][1000 genomes]
rs10490270	0.91[ASN][1000 genomes]
rs10932083	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11883548	1.00[AMR][1000 genomes]
rs11887897	1.00[AMR][1000 genomes]
rs11897822	0.89[ASN][1000 genomes]
rs11901243	1.00[AMR][1000 genomes]
rs13431268	0.89[ASN][1000 genomes]
rs17595154	0.88[ASN][1000 genomes]
rs17595168	0.85[ASN][1000 genomes]
rs17595196	0.89[ASN][1000 genomes]
rs17595210	0.89[ASN][1000 genomes]
rs17595217	0.89[ASN][1000 genomes]
rs17595238	0.89[ASN][1000 genomes]
rs17595379	0.91[ASN][1000 genomes]
rs17637976	0.89[ASN][1000 genomes]
rs17637988	0.89[ASN][1000 genomes]
rs17638005	0.89[ASN][1000 genomes]
rs17638018	0.89[ASN][1000 genomes]
rs17638036	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2216320	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs41425446	0.91[ASN][1000 genomes]
rs41440444	0.91[ASN][1000 genomes]
rs41511746	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[ASN][1000 genomes]
rs57526221	0.87[ASN][1000 genomes]
rs57991840	0.91[ASN][1000 genomes]
rs58727861	0.96[ASN][1000 genomes]
rs58748975	0.89[ASN][1000 genomes]
rs58798694	1.00[ASN][1000 genomes]
rs58870976	0.89[ASN][1000 genomes]
rs59978061	1.00[AMR][1000 genomes]
rs60179096	1.00[AMR][1000 genomes]
rs61014400	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6731832	1.00[AMR][1000 genomes]
rs6751997	0.91[ASN][1000 genomes]
rs73059006	1.00[AMR][1000 genomes]
rs73059007	1.00[AMR][1000 genomes]
rs73059010	1.00[AMR][1000 genomes]
rs73059013	1.00[AMR][1000 genomes]
rs73059018	1.00[AMR][1000 genomes]
rs73984246	1.00[AMR][1000 genomes]
rs73984251	1.00[AMR][1000 genomes]
rs73984286	0.80[ASN][1000 genomes]
rs7562459	0.87[ASN][1000 genomes]
rs7565896	0.96[ASN][1000 genomes]
rs7577949	1.00[AMR][1000 genomes]
rs7584529	0.91[ASN][1000 genomes]
rs7595278	0.89[ASN][1000 genomes]
rs7603478	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875723	chr2:205489653-205612846	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205494200-205508800	Weak transcription	HSMM	muscle
2	chr2:205494200-205509800	Weak transcription	HSMMtube	muscle
3	chr2:205501200-205516600	Weak transcription	Aorta	Aorta
4	chr2:205502800-205508600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:205502800-205515000	Weak transcription	Psoas Muscle	Psoas
6	chr2:205504200-205516000	Weak transcription	Fetal Stomach	stomach
7	chr2:205505400-205521600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:205506200-205507400	Enhancers	Rectal Smooth Muscle	rectum
9	chr2:205506200-205511200	Enhancers	Colon Smooth Muscle	Colon
10	chr2:205506600-205507000	Weak transcription	Ovary	ovary
11	chr2:205506600-205508400	Weak transcription	Fetal Lung	lung
12	chr2:205506800-205509200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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