Variant report

Variant	rs16836888
Chromosome Location	chr2:205936764-205936765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205936743..205937742-chr3:73160044..73160573,3	MCF-7	breast:
2	chr17:41444159..41445778-chr2:205935723..205937243,3	K562	blood:
3	chr17:41398936..41400769-chr2:205935723..205938741,4	MCF-7	breast:
4	chr17:73315232..73318212-chr2:205935723..205937223,2	K562	blood:
5	chr17:41463848..41467923-chr2:205935721..205938743,8	K562	blood:
6	chr17:41380451..41382255-chr2:205935721..205937243,2	MCF-7	breast:
7	chr17:41398372..41402141-chr2:205935721..205938742,9	K562	blood:
8	chr17:41380655..41383431-chr2:205935723..205937243,4	K562	blood:
9	chr17:41398724..41400293-chr2:205935721..205937223,2	MCF-7	breast:
10	chr17:41398372..41402569-chr2:205935723..205938741,10	K562	blood:
11	chr17:41463788..41466146-chr2:205935723..205938723,5	K562	blood:
12	chr2:205935056..205937652-chr2:205937908..205940527,2	K562	blood:
13	chr19:49943964..49945482-chr2:205935743..205938741,2	K562	blood:
14	chr2:205936743..205937743-chr3:73159952..73161110,6	HCT-116	colon:
15	chr2:205926708..205929388-chr2:205934708..205936918,2	K562	blood:
16	chr17:41463327..41467959-chr2:205935723..205938742,6	MCF-7	breast:
17	chr17:41380721..41382422-chr2:205935723..205938721,2	MCF-7	breast:
18	chr17:41380655..41383476-chr2:205935721..205937223,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000177885	Chromatin interaction
ENSG00000236383	Chromatin interaction
ENSG00000257073	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000104888	Chromatin interaction
ENSG00000223247	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7559302	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205921400-205943600	Weak transcription	Aorta	Aorta
2	chr2:205932800-205941200	Weak transcription	Pancreas	Pancrea
3	chr2:205935200-205943600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:205935400-205943800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:205935600-205941200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:205936000-205943600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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