Variant report

Variant	rs16837058
Chromosome Location	chr1:155799623-155799624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155792548..155794810-chr1:155798321..155800474,2	K562	blood:
2	chr1:155798918..155800713-chr1:155804117..155806724,2	K562	blood:
3	chr1:155799410..155800938-chr1:155802704..155804564,2	K562	blood:
4	chr1:155798865..155802623-chr1:155880941..155882734,3	K562	blood:
5	chr1:155769410..155771297-chr1:155796541..155800799,3	K562	blood:

Variant related genes	Relation type
ENSG00000143622	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13375894	1.00[AMR][1000 genomes]
rs13376498	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836971	1.00[AMR][1000 genomes]
rs34290183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57468684	1.00[AMR][1000 genomes]
rs57883269	1.00[AMR][1000 genomes]
rs58774418	1.00[AMR][1000 genomes]
rs59287240	1.00[AMR][1000 genomes]
rs60777355	1.00[AMR][1000 genomes]
rs61375216	1.00[AMR][1000 genomes]
rs6663016	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6699393	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548199	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550827	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv872469	chr1:155743310-155810293	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1003170	chr1:155762204-155836564	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155720200-155803600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:155765200-155803800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:155765200-155813200	Weak transcription	Psoas Muscle	Psoas
4	chr1:155782200-155800800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:155783600-155823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:155786800-155801600	Strong transcription	Fetal Stomach	stomach
7	chr1:155786800-155802400	Strong transcription	Fetal Intestine Small	intestine
8	chr1:155787600-155822000	Weak transcription	Esophagus	oesophagus
9	chr1:155789600-155822000	Weak transcription	Fetal Brain Male	brain
10	chr1:155790600-155813200	Weak transcription	Gastric	stomach
11	chr1:155791800-155814800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:155792200-155803600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:155792200-155803600	Weak transcription	Right Ventricle	heart
14	chr1:155792200-155803600	Weak transcription	Spleen	Spleen
15	chr1:155792200-155803800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:155792200-155804000	Weak transcription	Fetal Heart	heart
17	chr1:155792200-155814200	Weak transcription	Colonic Mucosa	Colon
18	chr1:155792200-155814800	Weak transcription	HMEC	breast
19	chr1:155792200-155822000	Weak transcription	Pancreas	Pancrea
20	chr1:155792200-155826000	Weak transcription	Stomach Mucosa	stomach
21	chr1:155792400-155800400	Weak transcription	A549	lung
22	chr1:155792400-155803600	Weak transcription	Ovary	ovary
23	chr1:155792400-155804200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:155792400-155806200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr1:155792400-155814800	Weak transcription	Colon Smooth Muscle	Colon
26	chr1:155792400-155826600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:155792600-155803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:155792600-155813000	Weak transcription	Brain Angular Gyrus	brain
29	chr1:155792600-155813800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:155792600-155822800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:155792800-155806200	Weak transcription	NHEK	skin
32	chr1:155793400-155814400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr1:155793400-155820200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:155793600-155814600	Weak transcription	HUVEC	blood vessel
35	chr1:155793800-155813600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr1:155793800-155814600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr1:155793800-155815000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:155794000-155804200	Weak transcription	NHDF-Ad	bronchial
39	chr1:155794200-155802800	Weak transcription	K562	blood
40	chr1:155795000-155803800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr1:155795200-155802600	Weak transcription	GM12878-XiMat	blood
42	chr1:155795200-155803800	Weak transcription	HSMMtube	muscle
43	chr1:155795200-155815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr1:155795200-155817800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:155795400-155801400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr1:155796000-155813000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr1:155796000-155814600	Weak transcription	Brain Germinal Matrix	brain
48	chr1:155796000-155814600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr1:155796200-155803600	Weak transcription	Brain Substantia Nigra	brain
50	chr1:155796200-155813400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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