Variant report

Variant	rs16837153
Chromosome Location	chr1:156026532-156026533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:156026520-156026670	Hela-S3	cervix:	n/a	n/a
2	CTCF	chr1:156026420-156026570	HepG2	liver:	n/a	n/a
3	CTCF	chr1:156026500-156026650	HPAF	blood vessel:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155910162..155912916-chr1:156023785..156027040,3	K562	blood:
2	chr1:156020921..156027711-chr1:156049923..156054443,13	MCF-7	breast:
3	chr1:155959707..155961223-chr1:156023678..156026675,2	K562	blood:
4	chr1:156022351..156027006-chr1:156029029..156033321,8	K562	blood:
5	chr1:155987340..155997180-chr1:156020881..156026682,16	K562	blood:
6	chr1:156025494..156028175-chr1:156040661..156042369,2	MCF-7	breast:
7	chr1:156000528..156003078-chr1:156026307..156028954,2	MCF-7	breast:
8	chr1:156021824..156029449-chr1:156048211..156054505,9	K562	blood:
9	chr1:156022351..156029359-chr1:156031482..156039384,14	K562	blood:
10	chr1:156024764..156027675-chr1:156050431..156053756,3	K562	blood:
11	chr1:155945057..155948418-chr1:156022741..156026553,6	K562	blood:
12	chr1:155945057..155948418-chr1:156022747..156026553,6	K562	blood:
13	chr1:156022485..156028763-chr1:156033587..156043738,11	K562	blood:
14	chr1:155900582..155906000-chr1:156022334..156026632,8	MCF-7	breast:

No data

Variant related genes	Relation type
RAB25	TF binding region
UBQLN4	TF binding region
ENSG00000254726	Chromatin interaction
ENSG00000173080	Chromatin interaction
ENSG00000224276	Chromatin interaction
ENSG00000116584	Chromatin interaction
ENSG00000163479	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000132698	Chromatin interaction
ENSG00000160789	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16837056	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:156025400-156026600	Enhancers	Primary T cells fromperipheralblood	blood
2	chr1:156025400-156026600	Enhancers	Fetal Heart	heart
3	chr1:156025400-156026600	Enhancers	Thymus	Thymus
4	chr1:156025400-156027600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:156025400-156027600	Weak transcription	Aorta	Aorta
6	chr1:156025400-156027600	Weak transcription	Ovary	ovary
7	chr1:156025400-156030800	Weak transcription	Small Intestine	intestine
8	chr1:156025600-156026600	Enhancers	Primary B cells from cord blood	blood
9	chr1:156025600-156026600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:156025600-156026600	Enhancers	Placenta	Placenta
11	chr1:156025600-156027600	Weak transcription	Esophagus	oesophagus
12	chr1:156025600-156028000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:156025600-156030000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:156025600-156030600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:156025600-156030800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:156025600-156031000	Weak transcription	Right Atrium	heart
17	chr1:156025600-156032000	Weak transcription	HSMMtube	muscle
18	chr1:156025600-156039600	Weak transcription	Left Ventricle	heart
19	chr1:156025800-156026600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:156025800-156026600	Weak transcription	Fetal Thymus	thymus
21	chr1:156025800-156026600	Enhancers	A549	lung
22	chr1:156025800-156026600	Genic enhancers	Dnd41	blood
23	chr1:156025800-156026600	Genic enhancers	Hela-S3	cervix
24	chr1:156025800-156026600	Enhancers	HepG2	liver
25	chr1:156025800-156026600	Enhancers	K562	blood
26	chr1:156025800-156027200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:156025800-156027400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr1:156025800-156027400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:156025800-156027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:156025800-156027600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr1:156025800-156027600	Weak transcription	Gastric	stomach
32	chr1:156025800-156027600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr1:156025800-156027800	Weak transcription	Primary T cells from cord blood	blood
34	chr1:156025800-156027800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:156025800-156028000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:156025800-156028400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:156025800-156030400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:156025800-156030600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr1:156025800-156030600	Weak transcription	Colonic Mucosa	Colon
40	chr1:156025800-156030600	Weak transcription	Fetal Kidney	kidney
41	chr1:156025800-156030600	Weak transcription	Stomach Mucosa	stomach
42	chr1:156025800-156030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:156025800-156039800	Weak transcription	Right Ventricle	heart
44	chr1:156025800-156050600	Weak transcription	Osteobl	bone
45	chr1:156026000-156026600	Genic enhancers	Primary monocytes fromperipheralblood	blood
46	chr1:156026000-156026600	Enhancers	Duodenum Mucosa	Duodenum
47	chr1:156026000-156026600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
48	chr1:156026000-156026600	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr1:156026000-156026800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:156026000-156027200	Weak transcription	Brain Hippocampus Middle	brain

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