Variant report

Variant	rs16837629
Chromosome Location	chr1:149853645-149853646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:149852844-149854629	K562	blood:	n/a	n/a
2	POLR2A	chr1:149853427-149854016	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr1:149853366-149854113	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chr1:149853602-149853662	GM12878	blood:	n/a	n/a
5	POLR2A	chr1:149853567-149853693	K562	blood:	n/a	n/a
6	MAFF	chr1:149853468-149853826	HepG2	liver:	n/a	n/a
7	MAX	chr1:149853433-149853786	K562	blood:	n/a	chr1:149853664-149853674
8	POLR2A	chr1:149853538-149853889	HepG2	liver:	n/a	n/a
9	MAFK	chr1:149853470-149853803	HepG2	liver:	n/a	n/a
10	CEBPD	chr1:149853342-149854083	K562	blood:	n/a	n/a
11	EP300	chr1:149853561-149853706	HepG2	liver:	n/a	n/a
12	MAFK	chr1:149853478-149853832	HepG2	liver:	n/a	n/a
13	RFX5	chr1:149853521-149853684	HepG2	liver:	n/a	n/a
14	POLR2A	chr1:149853202-149861769	K562	blood:	n/a	n/a
15	POLR2A	chr1:149852655-149863016	K562	blood:	n/a	n/a
16	MYC	chr1:149853625-149853825	NB4	blood:	n/a	chr1:149853664-149853674

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149813687..149823244-chr1:149851297..149861525,76	MCF-7	breast:
2	chr1:149853005..149861438-chr1:149978765..149991065,34	MCF-7	breast:
3	chr1:149852946..149855722-chr8:144717602..144719640,2	MCF-7	breast:
4	chr1:149853460..149855808-chr1:150158235..150161131,2	K562	blood:
5	chr1:149813697..149823354-chr1:149851773..149862006,115	MCF-7	breast:

No data

Variant related genes	Relation type
HIST2H2AC	TF binding region
ENSG00000220323	Chromatin interaction
ENSG00000163113	Chromatin interaction
ENSG00000183558	Chromatin interaction
ENSG00000261716	Chromatin interaction
ENSG00000203819	Chromatin interaction
ENSG00000183309	Chromatin interaction
ENSG00000203812	Chromatin interaction
ENSG00000272993	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12087748	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16837824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16838897	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16841820	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55633017	0.83[AFR][1000 genomes]
rs59956612	1.00[AMR][1000 genomes]
rs61277719	1.00[AMR][1000 genomes]
rs61570934	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72708153	0.83[AFR][1000 genomes]
rs7518476	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	nsv831525	chr1:149701537-149878033	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
3	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149846400-149855200	Weak transcription	Fetal Stomach	stomach
2	chr1:149846600-149854400	Weak transcription	Primary B cells from cord blood	blood
3	chr1:149849200-149855800	Weak transcription	Right Atrium	heart
4	chr1:149849600-149854800	Weak transcription	Psoas Muscle	Psoas
5	chr1:149849600-149855200	Weak transcription	Placenta	Placenta
6	chr1:149849600-149855200	Weak transcription	Left Ventricle	heart
7	chr1:149849600-149855200	Weak transcription	Right Ventricle	heart
8	chr1:149849600-149855200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:149849800-149855000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:149849800-149855200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:149850000-149854200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:149851200-149855200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr1:149851600-149855200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:149851600-149855200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:149851600-149855200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:149851800-149855800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:149852000-149855000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:149852000-149855800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:149852200-149853800	Weak transcription	Thymus	Thymus
20	chr1:149852200-149855000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr1:149852200-149855600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr1:149852600-149855000	Weak transcription	Fetal Lung	lung
23	chr1:149852800-149854600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr1:149853000-149853800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr1:149853000-149853800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:149853000-149855400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:149853200-149854200	Enhancers	HepG2	liver
28	chr1:149853400-149853800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:149853400-149854000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr1:149853400-149854000	Enhancers	Fetal Intestine Large	intestine
31	chr1:149853400-149854400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr1:149853400-149854400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr1:149853400-149854400	Enhancers	Fetal Intestine Small	intestine
34	chr1:149853400-149854600	Enhancers	Liver	Liver
35	chr1:149853400-149855600	Enhancers	Fetal Thymus	thymus
36	chr1:149853400-149856000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr1:149853600-149853800	Enhancers	Brain Germinal Matrix	brain
38	chr1:149853600-149853800	Enhancers	A549	lung
39	chr1:149853600-149854000	Enhancers	Primary T cells from cord blood	blood
40	chr1:149853600-149855000	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr1:149853600-149855000	Enhancers	K562	blood
42	chr1:149853600-149856200	Weak transcription	Pancreas	Pancrea

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