Variant report

Variant	rs16839951
Chromosome Location	chr1:158155967-158155968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10489821	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10489823	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12409273	0.86[AMR][1000 genomes]
rs1570699	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1980757	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3021476	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3021478	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3087210	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3087211	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3087212	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3087213	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55819216	0.86[AMR][1000 genomes]
rs56379344	0.83[AMR][1000 genomes]
rs6671299	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6692064	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6692133	0.89[EUR][1000 genomes]
rs72711995	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72711999	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7513330	0.86[AMR][1000 genomes]
rs7527480	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7530662	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7548147	0.85[EUR][1000 genomes]
rs7550767	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7556487	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs859001	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs859002	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs859003	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs859005	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs859008	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs859009	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs859010	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs859011	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs859013	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158151600-158156400	Weak transcription	Pancreas	Pancrea
2	chr1:158151800-158156600	Weak transcription	Spleen	Spleen
3	chr1:158152800-158156600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:158153600-158156400	Genic enhancers	Fetal Thymus	thymus
5	chr1:158153600-158163400	Weak transcription	Dnd41	blood
6	chr1:158154400-158156400	Weak transcription	Thymus	Thymus
7	chr1:158154400-158156600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:158155000-158156200	Enhancers	Liver	Liver
9	chr1:158155000-158156400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:158155000-158158800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:158155200-158156600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr1:158155200-158156800	Enhancers	Primary B cells from cord blood	blood
13	chr1:158155400-158156800	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:158155400-158156800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:158155400-158157000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr1:158155600-158156600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:158155600-158156800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr1:158155600-158156800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:158155600-158156800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr1:158155600-158156800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:158155600-158157200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:158155800-158156000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
23	chr1:158155800-158156000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr1:158155800-158156000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:158155800-158156200	Enhancers	Duodenum Mucosa	Duodenum
26	chr1:158155800-158156400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:158155800-158156800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr1:158155800-158156800	Enhancers	H9 Cell Line	embryonic stem cell
29	chr1:158155800-158156800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr1:158155800-158156800	Enhancers	NHEK	skin

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