Variant report

Variant	rs16840189
Chromosome Location	chr1:196551218-196551219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10737677	1.00[AMR][1000 genomes]
rs10801540	1.00[AMR][1000 genomes]
rs10801541	1.00[AMR][1000 genomes]
rs10801542	1.00[AMR][1000 genomes]
rs10922074	1.00[MEX][hapmap]
rs10922080	1.00[AMR][1000 genomes]
rs1339948	1.00[AMR][1000 genomes]
rs1339952	1.00[MEX][hapmap]
rs1339956	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1361402	1.00[MEX][hapmap]
rs1416963	1.00[AMR][1000 genomes]
rs1416968	1.00[AMR][1000 genomes]
rs1538681	1.00[AMR][1000 genomes]
rs1538682	1.00[AMR][1000 genomes]
rs16839916	1.00[AMR][1000 genomes]
rs16840219	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1890801	1.00[AMR][1000 genomes]
rs2335902	1.00[AMR][1000 genomes]
rs2335904	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs3928858	1.00[MEX][hapmap]
rs4255328	1.00[AMR][1000 genomes]
rs4290012	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4411090	1.00[AMR][1000 genomes]
rs4484881	1.00[AMR][1000 genomes]
rs4500252	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4607811	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4658035	1.00[AMR][1000 genomes]
rs4658037	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4658038	1.00[AMR][1000 genomes]
rs4658044	1.00[AMR][1000 genomes]
rs4658045	1.00[AMR][1000 genomes]
rs60840993	1.00[AMR][1000 genomes]
rs6413932	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6413933	1.00[AMR][1000 genomes]
rs6428342	1.00[MEX][hapmap]
rs6428343	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6428344	1.00[AMR][1000 genomes]
rs6428345	1.00[AMR][1000 genomes]
rs6657157	1.00[AMR][1000 genomes]
rs6664020	1.00[AMR][1000 genomes]
rs6678139	1.00[AMR][1000 genomes]
rs6679424	1.00[AMR][1000 genomes]
rs6690518	1.00[AMR][1000 genomes]
rs6690846	1.00[AMR][1000 genomes]
rs6692565	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6698581	1.00[AMR][1000 genomes]
rs73065849	1.00[AMR][1000 genomes]
rs7511869	1.00[AMR][1000 genomes]
rs7512647	1.00[AMR][1000 genomes]
rs7527233	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7552572	1.00[AMR][1000 genomes]
rs946754	1.00[MEX][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196527800-196559400	Weak transcription	Ovary	ovary
2	chr1:196541600-196553200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:196547800-196556200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:196547800-196559000	Weak transcription	Liver	Liver
5	chr1:196548200-196557400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:196548400-196557600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:196551200-196551400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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