Variant report

Variant	rs16840429
Chromosome Location	chr1:158615217-158615218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10489838	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11801809	1.00[CEU][hapmap]
rs16830483	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16840385	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16840418	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16840423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273515	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41523545	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684234	1.00[CEU][hapmap]
rs7514181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7514285	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7514536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7529045	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3491788	chr1:158537183-158725907	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3491789	chr1:158537242-158725858	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158611800-158618600	Weak transcription	Fetal Thymus	thymus
2	chr1:158612200-158628800	Strong transcription	K562	blood
3	chr1:158613200-158616600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr1:158613200-158617600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:158613400-158616400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:158614000-158616800	Enhancers	Primary B cells from cord blood	blood
7	chr1:158614000-158616800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:158614600-158615600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:158614600-158615800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:158614800-158615800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:158615000-158623000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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