Variant report

Variant	rs16840877
Chromosome Location	chr2:209165619-209165620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16840819	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840827	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2164724	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4290590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv834517	chr2:209006797-209170269	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv875752	chr2:209141066-209235373	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209136000-209171800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:209139400-209180000	Strong transcription	Fetal Thymus	thymus
3	chr2:209141200-209180000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:209141800-209169000	Weak transcription	Hela-S3	cervix
5	chr2:209147400-209225600	Weak transcription	Stomach Mucosa	stomach
6	chr2:209147800-209168200	Weak transcription	Gastric	stomach
7	chr2:209148600-209167600	Weak transcription	Esophagus	oesophagus
8	chr2:209148600-209169600	Weak transcription	Spleen	Spleen
9	chr2:209149600-209179800	Strong transcription	Dnd41	blood
10	chr2:209153200-209165800	Weak transcription	Fetal Heart	heart
11	chr2:209154000-209168400	Weak transcription	NHLF	lung
12	chr2:209155400-209168400	Weak transcription	HSMMtube	muscle
13	chr2:209155400-209169400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:209155600-209169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:209155600-209170000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:209156000-209180000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr2:209156200-209166000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr2:209156200-209166000	Weak transcription	A549	lung
19	chr2:209156200-209168600	Weak transcription	HMEC	breast
20	chr2:209157200-209173600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:209159200-209182200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:209159800-209179400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:209160000-209188800	Weak transcription	Small Intestine	intestine
24	chr2:209162400-209171400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:209162400-209171400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:209162400-209172000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:209162400-209172000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr2:209162400-209174600	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr2:209162600-209171000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:209162600-209171200	Strong transcription	Liver	Liver
31	chr2:209162800-209170800	Strong transcription	HepG2	liver
32	chr2:209162800-209171400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr2:209162800-209171600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr2:209162800-209171800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr2:209162800-209173000	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:209163000-209170000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr2:209163000-209170800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:209163000-209171400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:209163000-209187400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr2:209163200-209168200	Strong transcription	Fetal Brain Female	brain
41	chr2:209163200-209170200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:209163200-209170200	Strong transcription	Brain Hippocampus Middle	brain
43	chr2:209163200-209171200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr2:209163200-209171400	Strong transcription	Adipose Nuclei	Adipose
45	chr2:209163200-209171400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr2:209163200-209171400	Strong transcription	HUVEC	blood vessel
47	chr2:209163200-209171600	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr2:209163200-209177000	Strong transcription	Primary hematopoietic stem cells	blood
49	chr2:209163200-209180600	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr2:209163200-209187400	Strong transcription	Primary T cells fromperipheralblood	blood

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