Variant report

Variant	rs16841302
Chromosome Location	chr4:7803078-7803079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7803065..7804892-chr4:7807691..7809470,2	K562	blood:
2	chr4:7803065..7805141-chr4:7807691..7809396,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58457272	0.80[AFR][1000 genomes]
rs6814307	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1007319	chr4:7705550-7832097	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv537018	chr4:7705550-7832097	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1006642	chr4:7786980-7811291	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7762000-7805800	Weak transcription	Stomach Mucosa	stomach
2	chr4:7770800-7828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:7776400-7806800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:7781600-7807400	Weak transcription	Brain Angular Gyrus	brain
5	chr4:7783800-7806200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:7784000-7821200	Weak transcription	Small Intestine	intestine
7	chr4:7784800-7803400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:7785800-7803800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:7787000-7829400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:7789200-7806600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:7790800-7803600	Strong transcription	HSMM	muscle
12	chr4:7791000-7806600	Weak transcription	Psoas Muscle	Psoas
13	chr4:7791000-7829400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr4:7791400-7806600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:7792200-7803200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:7792600-7803400	Strong transcription	A549	lung
17	chr4:7793200-7803800	Strong transcription	NH-A	brain
18	chr4:7794400-7803600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:7794800-7803400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:7795600-7803800	Weak transcription	Fetal Kidney	kidney
21	chr4:7795800-7803800	Weak transcription	Fetal Heart	heart
22	chr4:7796000-7803400	Strong transcription	HUVEC	blood vessel
23	chr4:7796600-7803400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:7796800-7804200	Strong transcription	NHEK	skin
25	chr4:7797000-7807000	Weak transcription	Liver	Liver
26	chr4:7797200-7803800	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr4:7797600-7803200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:7797600-7803200	Strong transcription	Fetal Stomach	stomach
29	chr4:7797800-7803200	Strong transcription	NHDF-Ad	bronchial
30	chr4:7797800-7803400	Strong transcription	Fetal Intestine Large	intestine
31	chr4:7797800-7803600	Strong transcription	Fetal Muscle Leg	muscle
32	chr4:7798200-7807200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:7798800-7803200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:7799000-7803400	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr4:7799200-7803200	Strong transcription	Fetal Intestine Small	intestine
36	chr4:7800000-7803600	Strong transcription	Hela-S3	cervix
37	chr4:7800200-7807200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr4:7800600-7805000	Weak transcription	Primary T cells from cord blood	blood
39	chr4:7800600-7806200	Weak transcription	Fetal Thymus	thymus
40	chr4:7800600-7828800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr4:7801000-7803400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:7801000-7803800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:7801000-7804000	Strong transcription	Osteobl	bone
44	chr4:7801400-7807200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr4:7801400-7807400	Weak transcription	Right Ventricle	heart
46	chr4:7801800-7807400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr4:7802000-7806200	Weak transcription	Fetal Brain Male	brain
48	chr4:7802000-7807200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:7802000-7807200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr4:7802000-7807800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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