Variant report

Variant	rs16841368
Chromosome Location	chr4:7902696-7902697
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7881697..7884478-chr4:7901263..7903029,2	MCF-7	breast:
2	chr4:7900242..7903106-chr4:7943268..7945113,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10213406	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28668865	1.00[EUR][1000 genomes]
rs56663055	0.89[EUR][1000 genomes]
rs56943746	1.00[EUR][1000 genomes]
rs61601120	0.90[EUR][1000 genomes]
rs73073913	0.89[EUR][1000 genomes]
rs73073928	1.00[EUR][1000 genomes]
rs73073931	1.00[EUR][1000 genomes]
rs73073932	1.00[EUR][1000 genomes]
rs73073935	1.00[EUR][1000 genomes]
rs73073948	1.00[EUR][1000 genomes]
rs73073953	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73073960	1.00[EUR][1000 genomes]
rs73088504	0.89[EUR][1000 genomes]
rs73090510	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7883200-7904400	Weak transcription	Gastric	stomach
2	chr4:7886800-7904400	Weak transcription	Small Intestine	intestine
3	chr4:7892600-7903800	Weak transcription	Stomach Mucosa	stomach
4	chr4:7893200-7903400	Weak transcription	Fetal Kidney	kidney
5	chr4:7893200-7905600	Weak transcription	Brain Angular Gyrus	brain
6	chr4:7894200-7912400	Weak transcription	Fetal Intestine Large	intestine
7	chr4:7894400-7904400	Weak transcription	Left Ventricle	heart
8	chr4:7894400-7906200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:7894600-7902800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:7895600-7907600	Weak transcription	Colonic Mucosa	Colon
11	chr4:7896800-7903000	Weak transcription	Placenta	Placenta
12	chr4:7896800-7903200	Weak transcription	Right Ventricle	heart
13	chr4:7896800-7904400	Weak transcription	Adipose Nuclei	Adipose
14	chr4:7896800-7904400	Weak transcription	Spleen	Spleen
15	chr4:7896800-7907600	Weak transcription	Fetal Intestine Small	intestine
16	chr4:7897000-7902800	Weak transcription	Right Atrium	heart
17	chr4:7897000-7907400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:7897400-7905800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:7898600-7904400	Enhancers	A549	lung
20	chr4:7898800-7905200	Enhancers	Colon Smooth Muscle	Colon
21	chr4:7899200-7905800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:7899400-7903000	Enhancers	Fetal Stomach	stomach
23	chr4:7899600-7907000	Enhancers	Fetal Brain Male	brain
24	chr4:7899800-7930600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:7900000-7904000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:7900000-7905000	Weak transcription	HMEC	breast
27	chr4:7900000-7906400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:7900000-7907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr4:7900200-7905400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:7900200-7905600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr4:7900200-7912400	Weak transcription	NHEK	skin
32	chr4:7900400-7904400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr4:7900400-7904600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr4:7900400-7905800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:7900800-7905000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr4:7900800-7906000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr4:7900800-7914400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:7901000-7903000	Enhancers	Stomach Smooth Muscle	stomach
39	chr4:7901000-7904400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr4:7901000-7904400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr4:7901000-7905200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr4:7901000-7905600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr4:7901000-7905800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:7901000-7907400	Enhancers	HSMMtube	muscle
45	chr4:7901000-7909000	Enhancers	Fetal Brain Female	brain
46	chr4:7901200-7905200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:7901400-7909400	Enhancers	Fetal Lung	lung
48	chr4:7901600-7903400	Enhancers	H9 Cell Line	embryonic stem cell
49	chr4:7901600-7905000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr4:7901600-7905800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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