Variant report

Variant	rs16841417
Chromosome Location	chr4:7919532-7919533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7919498..7922242-chr4:7928069..7929802,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11939532	1.00[AMR][1000 genomes]
rs11941953	1.00[AMR][1000 genomes]
rs16841372	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16841394	1.00[MEX][hapmap]
rs16841396	1.00[MEX][hapmap]
rs16841410	1.00[AMR][1000 genomes]
rs16841413	1.00[AMR][1000 genomes]
rs16841422	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs28680312	1.00[AMR][1000 genomes]
rs4235268	1.00[YRI][hapmap]
rs4235269	1.00[YRI][hapmap]
rs4345163	1.00[YRI][hapmap]
rs4385040	1.00[YRI][hapmap]
rs4696834	1.00[YRI][hapmap]
rs5012708	1.00[YRI][hapmap]
rs5012709	1.00[YRI][hapmap]
rs7667982	1.00[YRI][hapmap]
rs7685634	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7899800-7930600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:7907800-7935800	Weak transcription	Right Ventricle	heart
3	chr4:7909200-7925400	Weak transcription	Hela-S3	cervix
4	chr4:7912000-7931200	Weak transcription	Aorta	Aorta
5	chr4:7912800-7931200	Weak transcription	Gastric	stomach
6	chr4:7913000-7927600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:7913000-7930600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:7913000-7931000	Weak transcription	Fetal Intestine Large	intestine
9	chr4:7913200-7919600	Weak transcription	Lung	lung
10	chr4:7913200-7926400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:7913400-7919800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:7913600-7926200	Weak transcription	Fetal Brain Female	brain
13	chr4:7913600-7927200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:7913600-7930400	Weak transcription	NHEK	skin
15	chr4:7913800-7919600	Weak transcription	Adipose Nuclei	Adipose
16	chr4:7913800-7925600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:7914000-7926800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:7914200-7919600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:7914200-7919600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:7914200-7925800	Weak transcription	HSMMtube	muscle
21	chr4:7914200-7930800	Weak transcription	Fetal Kidney	kidney
22	chr4:7914400-7925600	Weak transcription	HSMM	muscle
23	chr4:7914800-7919600	Weak transcription	HMEC	breast
24	chr4:7915000-7926000	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:7915000-7928200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:7915000-7930400	Weak transcription	Fetal Lung	lung
27	chr4:7916200-7919600	Enhancers	Fetal Heart	heart
28	chr4:7916200-7921200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr4:7917000-7919600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr4:7917000-7919800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr4:7917200-7919600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr4:7917200-7919800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr4:7917400-7919600	Genic enhancers	Osteobl	bone
34	chr4:7917400-7920200	Enhancers	Rectal Smooth Muscle	rectum
35	chr4:7917600-7919800	Enhancers	Stomach Smooth Muscle	stomach
36	chr4:7917800-7919600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr4:7917800-7920000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:7917800-7920000	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr4:7917800-7921200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:7918000-7919600	Enhancers	A549	lung
41	chr4:7918000-7919800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr4:7918200-7919600	Enhancers	HUVEC	blood vessel
43	chr4:7918200-7919800	Genic enhancers	Fetal Stomach	stomach
44	chr4:7918200-7921200	Enhancers	Colon Smooth Muscle	Colon
45	chr4:7918400-7919800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr4:7918400-7919800	Weak transcription	Left Ventricle	heart
47	chr4:7918400-7921000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr4:7918800-7919600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr4:7918800-7919600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr4:7918800-7919800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links