Variant report

Variant	rs16841686
Chromosome Location	chr2:209580297-209580298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11902403	1.00[EUR][1000 genomes]
rs13421435	1.00[EUR][1000 genomes]
rs16841510	1.00[EUR][1000 genomes]
rs16841569	1.00[EUR][1000 genomes]
rs16841683	1.00[EUR][1000 genomes]
rs16841684	1.00[EUR][1000 genomes]
rs16841688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58676317	1.00[EUR][1000 genomes]
rs61646669	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005292	chr2:209470753-209631662	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460056	chr2:209513915-209659222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv584303	chr2:209513915-209659222	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv875754	chr2:209523619-209622211	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv875755	chr2:209563753-209745017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv584304	chr2:209578600-209705159	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209578200-209583200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:209579600-209581000	Enhancers	Fetal Heart	heart
3	chr2:209580200-209580600	Weak transcription	Duodenum Smooth Muscle	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links