Variant report

Variant	rs16841775
Chromosome Location	chr1:150769529-150769530
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150718351..150719880-chr1:150768109..150769621,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12064646	1.00[EUR][1000 genomes]
rs12067174	1.00[EUR][1000 genomes]
rs2055974	1.00[EUR][1000 genomes]
rs4971048	1.00[EUR][1000 genomes]
rs6662183	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv437169	chr1:150738197-150816886	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
6	nsv2788	chr1:150755334-150800785	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv160180	chr1:150765276-150772670	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150760400-150771000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:150760600-150770200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:150760600-150771000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:150760600-150771400	Weak transcription	Fetal Kidney	kidney
5	chr1:150760600-150779600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:150760800-150771000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:150761200-150771000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr1:150761200-150783200	Weak transcription	GM12878-XiMat	blood
9	chr1:150761800-150770800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:150762400-150770200	Weak transcription	Esophagus	oesophagus
11	chr1:150762400-150779200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr1:150762400-150780000	Weak transcription	NHEK	skin
13	chr1:150763400-150769600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:150764200-150770600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:150764600-150781600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:150765400-150771000	Weak transcription	A549	lung
17	chr1:150765400-150781400	Weak transcription	HMEC	breast
18	chr1:150765400-150793600	Weak transcription	Fetal Heart	heart
19	chr1:150766600-150769600	Weak transcription	Brain Angular Gyrus	brain
20	chr1:150766800-150769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:150766800-150770200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:150766800-150773600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:150766800-150775800	Weak transcription	HUVEC	blood vessel
24	chr1:150767000-150769600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:150767000-150771000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr1:150767000-150779400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr1:150767200-150779400	Weak transcription	Fetal Brain Male	brain
28	chr1:150767400-150773000	Strong transcription	Fetal Stomach	stomach
29	chr1:150767400-150773600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:150767400-150773600	Strong transcription	Stomach Smooth Muscle	stomach
31	chr1:150767600-150771000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:150767600-150771800	Weak transcription	Thymus	Thymus
33	chr1:150767600-150772400	Strong transcription	Primary T cells from cord blood	blood
34	chr1:150767600-150773600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr1:150767600-150774000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:150767600-150783600	Weak transcription	Psoas Muscle	Psoas
37	chr1:150767800-150770200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:150767800-150771000	Strong transcription	NHDF-Ad	bronchial
39	chr1:150767800-150773200	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr1:150767800-150773200	Strong transcription	Osteobl	bone
41	chr1:150767800-150773400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr1:150767800-150773600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr1:150767800-150777000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:150767800-150778400	Strong transcription	Fetal Muscle Leg	muscle
45	chr1:150767800-150780200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr1:150768000-150769600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr1:150768000-150769600	Strong transcription	Pancreas	Pancrea
48	chr1:150768000-150770000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:150768000-150770000	Strong transcription	HSMMtube	muscle
50	chr1:150768000-150770800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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