Variant report

Variant	rs16841931
Chromosome Location	chr1:197741324-197741325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197740776..197744504-chr1:197869951..197872253,3	K562	blood:
2	chr1:197740677..197742202-chr1:197746593..197748799,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203724	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16829934	1.00[AFR][1000 genomes]
rs16841925	0.82[AFR][1000 genomes]
rs56010669	0.82[AFR][1000 genomes]
rs74134871	0.82[AFR][1000 genomes]
rs74134872	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427908	chr1:197611569-197767362	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197695800-197742200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:197702800-197743800	Weak transcription	Esophagus	oesophagus
3	chr1:197706800-197741800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:197712200-197741600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:197712200-197742000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:197714400-197743800	Weak transcription	Spleen	Spleen
7	chr1:197714600-197741600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:197714600-197742400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:197714600-197743600	Weak transcription	Ovary	ovary
10	chr1:197715400-197741800	Weak transcription	Gastric	stomach
11	chr1:197718600-197741800	Weak transcription	Osteobl	bone
12	chr1:197719200-197743800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:197721200-197743000	Weak transcription	Fetal Kidney	kidney
14	chr1:197730200-197742600	Weak transcription	HMEC	breast
15	chr1:197730600-197742600	Weak transcription	NH-A	brain
16	chr1:197731400-197742400	Weak transcription	Primary B cells from cord blood	blood
17	chr1:197731600-197743200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:197732000-197742400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr1:197733000-197741600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:197733200-197741800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:197733200-197742400	Weak transcription	Stomach Mucosa	stomach
22	chr1:197733400-197743000	Weak transcription	A549	lung
23	chr1:197734200-197742600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:197734600-197742200	Weak transcription	NHLF	lung
25	chr1:197735200-197743800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:197736200-197742400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr1:197736200-197743200	Weak transcription	Right Ventricle	heart
28	chr1:197737200-197742800	Weak transcription	Fetal Stomach	stomach
29	chr1:197737400-197741600	Weak transcription	Right Atrium	heart
30	chr1:197737400-197741800	Weak transcription	Hela-S3	cervix
31	chr1:197737400-197743600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr1:197737800-197742400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:197737800-197743000	Weak transcription	Fetal Muscle Leg	muscle
34	chr1:197738000-197742000	Weak transcription	Colon Smooth Muscle	Colon
35	chr1:197738800-197741600	Weak transcription	Liver	Liver
36	chr1:197738800-197742200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr1:197739000-197743600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr1:197739600-197742400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:197740000-197742000	Enhancers	Pancreas	Pancrea
40	chr1:197740000-197742200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr1:197740200-197741800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:197740200-197742000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr1:197740200-197742600	Enhancers	Small Intestine	intestine
44	chr1:197740200-197743000	Enhancers	Fetal Heart	heart
45	chr1:197740200-197743200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr1:197740400-197742400	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr1:197740400-197742600	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr1:197740400-197742800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:197740400-197743800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr1:197740600-197741400	Enhancers	Primary hematopoietic stem cells	blood

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