Variant report

Variant	rs16841946
Chromosome Location	chr1:159232582-159232583
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12074452	1.00[ASN][1000 genomes]
rs16841928	0.88[ASN][1000 genomes]
rs16841965	1.00[ASN][1000 genomes]
rs2325925	1.00[ASN][1000 genomes]
rs2325926	1.00[ASN][1000 genomes]
rs2325927	1.00[ASN][1000 genomes]
rs4534374	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159230600-159233200	Enhancers	NHEK	skin
2	chr1:159230800-159232800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:159231200-159232800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:159232000-159233200	Enhancers	HMEC	breast
5	chr1:159232200-159233400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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