Variant report

Variant	rs16842096
Chromosome Location	chr4:8346282-8346283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7667031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1009011	chr4:8225669-8424831	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv470013	chr4:8315938-8377058	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv878605	chr4:8332057-8378959	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8341800-8346400	Enhancers	Ovary	ovary
2	chr4:8342000-8346400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr4:8342000-8348800	Enhancers	Fetal Muscle Leg	muscle
4	chr4:8342800-8348800	Weak transcription	Spleen	Spleen
5	chr4:8342800-8352800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:8343800-8348200	Weak transcription	Brain Angular Gyrus	brain
7	chr4:8344400-8346400	Enhancers	Right Ventricle	heart
8	chr4:8344400-8347600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:8344600-8347800	Weak transcription	Brain Substantia Nigra	brain
10	chr4:8344600-8348000	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:8344600-8352800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:8344600-8354000	Weak transcription	Left Ventricle	heart
13	chr4:8344800-8346800	Enhancers	HSMMtube	muscle
14	chr4:8344800-8348200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:8345000-8346400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr4:8345000-8346800	Enhancers	HSMM	muscle
17	chr4:8345800-8346400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:8345800-8353000	Weak transcription	Right Atrium	heart
19	chr4:8346000-8346400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:8346000-8346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:8346000-8346600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr4:8346000-8347600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr4:8346000-8348200	Weak transcription	Fetal Heart	heart

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