Variant report

Variant	rs16842306
Chromosome Location	chr1:159565384-159565385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10494329	0.92[YRI][hapmap]
rs11804578	0.92[YRI][hapmap]
rs6688409	0.94[AFR][1000 genomes]
rs73020704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73020724	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159563800-159565400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:159563800-159573400	Weak transcription	Liver	Liver
3	chr1:159564000-159569400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:159564400-159565600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:159564600-159565400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:159564600-159565400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:159564800-159565400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:159564800-159565400	Enhancers	Spleen	Spleen
9	chr1:159565000-159565400	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:159565000-159565400	Enhancers	Adipose Nuclei	Adipose
11	chr1:159565000-159566400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:159565000-159566400	Weak transcription	HSMM	muscle
13	chr1:159565000-159566800	Weak transcription	HSMMtube	muscle
14	chr1:159565000-159567000	Weak transcription	Osteobl	bone
15	chr1:159565200-159565400	Flanking Active TSS	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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