Variant report

Variant	rs16842324
Chromosome Location	chr1:159567295-159567296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10494328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1900392	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60492138	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61226622	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159563800-159573400	Weak transcription	Liver	Liver
2	chr1:159564000-159569400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:159565400-159567400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:159565400-159567600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:159565400-159569200	Enhancers	HUVEC	blood vessel
6	chr1:159566400-159567600	Enhancers	HSMM	muscle
7	chr1:159566400-159569000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:159566600-159568600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:159566800-159567600	Enhancers	HSMMtube	muscle
10	chr1:159566800-159568800	Enhancers	NHEK	skin
11	chr1:159566800-159569200	Enhancers	HMEC	breast
12	chr1:159567000-159567400	Enhancers	NH-A	brain
13	chr1:159567000-159567800	Flanking Active TSS	A549	lung
14	chr1:159567000-159568600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:159567000-159568800	Enhancers	Osteobl	bone
16	chr1:159567200-159569000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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