Variant report

Variant	rs16842329
Chromosome Location	chr4:8467883-8467884
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10025940	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842325	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842333	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386224	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57229672	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57845616	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59477910	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62287388	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62287389	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447869	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6830523	1.00[ASN][1000 genomes]
rs6849528	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6855235	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686550	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv964737	chr4:8467874-8473530	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8446400-8473800	Strong transcription	Fetal Stomach	stomach
2	chr4:8446600-8473400	Strong transcription	Dnd41	blood
3	chr4:8446600-8474000	Strong transcription	Fetal Muscle Leg	muscle
4	chr4:8447000-8474400	Strong transcription	Fetal Brain Female	brain
5	chr4:8447000-8475200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:8447000-8480200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:8447200-8473000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:8447200-8480200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:8447400-8474000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:8447400-8482200	Strong transcription	Primary T cells from cord blood	blood
11	chr4:8447600-8472200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:8447600-8473400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr4:8447800-8472800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:8451200-8473600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:8456000-8469800	Weak transcription	Stomach Mucosa	stomach
16	chr4:8456800-8468600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:8457200-8470600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr4:8457800-8470800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:8458200-8472000	Weak transcription	Fetal Heart	heart
20	chr4:8459400-8474000	Strong transcription	Fetal Intestine Small	intestine
21	chr4:8459600-8470000	Weak transcription	Fetal Brain Male	brain
22	chr4:8459800-8478800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr4:8460000-8470000	Weak transcription	K562	blood
24	chr4:8460200-8469000	Weak transcription	Small Intestine	intestine
25	chr4:8460200-8470800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:8462400-8472800	Strong transcription	Liver	Liver
27	chr4:8463000-8470600	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:8463000-8471600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr4:8463400-8473800	Weak transcription	Fetal Kidney	kidney
30	chr4:8463600-8469800	Weak transcription	NHDF-Ad	bronchial
31	chr4:8463800-8478800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr4:8464200-8471200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr4:8464400-8471200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr4:8464600-8473200	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:8464600-8474000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:8464800-8468000	Strong transcription	Primary B cells from cord blood	blood
37	chr4:8464800-8468800	Strong transcription	HSMMtube	muscle
38	chr4:8464800-8472000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr4:8464800-8472000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:8464800-8473400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr4:8464800-8473600	Strong transcription	Brain Angular Gyrus	brain
42	chr4:8465000-8468000	Strong transcription	HepG2	liver
43	chr4:8465000-8468600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:8465000-8471400	Strong transcription	Left Ventricle	heart
45	chr4:8465200-8468000	Strong transcription	NH-A	brain
46	chr4:8465200-8468200	Genic enhancers	Placenta	Placenta
47	chr4:8465200-8470400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:8465200-8470600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr4:8465200-8470800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr4:8465200-8471400	Strong transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links