Variant report

Variant	rs16842388
Chromosome Location	chr2:209942430-209942431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10202661	0.83[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1079127	0.85[ASN][1000 genomes]
rs10932285	0.85[ASN][1000 genomes]
rs12465307	0.94[ASN][1000 genomes]
rs12466351	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12466359	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12470715	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1439746	0.85[ASN][1000 genomes]
rs1439748	0.85[ASN][1000 genomes]
rs1522190	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1522204	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1522205	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16842384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16842403	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16842470	0.88[ASN][1000 genomes]
rs16842488	0.85[ASN][1000 genomes]
rs16842496	0.85[ASN][1000 genomes]
rs17738719	0.82[ASN][1000 genomes]
rs1963242	0.82[ASN][1000 genomes]
rs3890029	0.85[ASN][1000 genomes]
rs3910599	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3914940	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3919699	0.85[ASN][1000 genomes]
rs4075133	0.85[ASN][1000 genomes]
rs4617987	0.85[ASN][1000 genomes]
rs57265106	0.82[ASN][1000 genomes]
rs62212901	0.94[ASN][1000 genomes]
rs62212905	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62212943	0.88[ASN][1000 genomes]
rs62212944	0.85[ASN][1000 genomes]
rs6715032	0.82[ASN][1000 genomes]
rs7425577	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012184	chr2:209755847-210049331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536131	chr2:209755847-210049331	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3487576	chr2:209768379-209947296	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3487577	chr2:209768379-209947296	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1009924	chr2:209805661-210042572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1002578	chr2:209836205-210026339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv536132	chr2:209836205-210026339	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1002788	chr2:209913805-209950811	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv3139	chr2:209915318-209964719	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv508198	chr2:209935777-209950086	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
12	esv2592840	chr2:209941134-209949361	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
13	esv3440276	chr2:209941807-209946505	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
14	esv2627203	chr2:209942069-209949323	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
15	esv3410551	chr2:209942257-209949755	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
16	esv3409545	chr2:209942377-209949352	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209941600-209942600	Enhancers	HUES48 Cell Line	embryonic stem cell

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