Variant report

Variant	rs16842559
Chromosome Location	chr1:159676171-159676172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11265260	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12068753	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12077166	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12084589	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12089687	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16842568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16842599	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3093059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3093068	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3093075	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3093077	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	esv1816835	chr1:159635021-159678816	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1829893	chr1:159635021-159678816	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv3188	chr1:159635132-159676182	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
C-reactive protein	23844046	GWAS catalog

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159669800-159682000	Weak transcription	Fetal Intestine Large	intestine
2	chr1:159674400-159676200	Enhancers	Brain Cingulate Gyrus	brain
3	chr1:159674600-159678600	Enhancers	Liver	Liver
4	chr1:159675200-159678200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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