Variant report

Variant	rs16842567
Chromosome Location	chr4:8550926-8550927
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:8548072..8551323-chr4:8572516..8575493,5	MCF-7	breast:
2	chr4:8550318..8551894-chr4:8573995..8577072,3	K562	blood:
3	chr4:8538338..8543611-chr4:8548493..8553766,7	MCF-7	breast:
4	chr4:8542053..8545358-chr4:8547295..8551816,4	MCF-7	breast:
5	chr4:8537532..8539229-chr4:8550769..8552595,2	MCF-7	breast:
6	chr4:8550386..8551492-chr4:8588111..8588948,4	MCF-7	breast:
7	chr4:8547302..8552930-chr4:8559663..8563639,8	MCF-7	breast:
8	chr4:8501425..8503291-chr4:8548491..8551263,2	MCF-7	breast:
9	chr4:8548779..8551744-chr4:8562159..8565274,3	MCF-7	breast:
10	chr4:8544480..8546948-chr4:8548054..8550987,2	K562	blood:
11	chr4:8550268..8552394-chr4:8552959..8555434,2	K562	blood:
12	chr4:8525437..8527279-chr4:8549040..8551142,2	MCF-7	breast:
13	chr4:8549627..8551396-chr4:8591821..8593935,2	MCF-7	breast:
14	chr4:8550768..8552665-chr4:8553902..8556293,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155269	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16842480	0.87[CHB][hapmap]
rs16842483	0.87[CHB][hapmap]
rs16842486	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs16842498	0.84[ASN][1000 genomes]
rs16842557	0.86[ASN][1000 genomes]
rs16842560	0.86[ASN][1000 genomes]
rs16842563	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs4247232	0.82[ASN][1000 genomes]
rs4247233	0.84[ASN][1000 genomes]
rs4619877	0.86[ASN][1000 genomes]
rs4696692	0.81[ASN][1000 genomes]
rs4696693	0.81[ASN][1000 genomes]
rs4696695	0.82[ASN][1000 genomes]
rs4696696	0.83[ASN][1000 genomes]
rs4696838	0.84[ASN][1000 genomes]
rs55765509	0.82[ASN][1000 genomes]
rs55789011	0.84[ASN][1000 genomes]
rs55977448	0.86[ASN][1000 genomes]
rs56053534	0.86[ASN][1000 genomes]
rs61258495	0.82[ASN][1000 genomes]
rs62287455	0.86[ASN][1000 genomes]
rs869600	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv461221	chr4:8534283-8554894	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv593640	chr4:8534283-8554894	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv878612	chr4:8534283-8618916	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1832730	chr4:8541086-9514568	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
7	esv1843578	chr4:8541086-9514568	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8544400-8551600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:8544400-8552600	Enhancers	Placenta	Placenta
3	chr4:8544800-8556600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:8546800-8551000	Weak transcription	Spleen	Spleen
5	chr4:8547600-8552400	Weak transcription	HSMMtube	muscle
6	chr4:8548800-8551400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr4:8549000-8551200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:8549400-8568400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:8549600-8551800	Enhancers	K562	blood
10	chr4:8550000-8551200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:8550400-8551600	Enhancers	Ovary	ovary
12	chr4:8550800-8551000	Enhancers	Esophagus	oesophagus
13	chr4:8550800-8551000	Enhancers	Stomach Mucosa	stomach
14	chr4:8550800-8551600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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