Variant report

Variant	rs16842648
Chromosome Location	chr3:134852490-134852491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1159403	0.96[MKK][hapmap]
rs12486464	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1501204	1.00[MEX][hapmap]
rs2400444	0.96[MKK][hapmap]
rs60752398	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764962	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134842200-134853200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:134847400-134859400	Weak transcription	Brain Anterior Caudate	brain
5	chr3:134849400-134855600	Enhancers	Fetal Brain Male	brain
6	chr3:134850200-134853600	Weak transcription	Psoas Muscle	Psoas
7	chr3:134850600-134860200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:134851000-134856400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:134851200-134853000	Enhancers	Brain Hippocampus Middle	brain
10	chr3:134851400-134852800	Enhancers	Fetal Brain Female	brain
11	chr3:134851400-134859400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:134852200-134853000	Enhancers	Brain Angular Gyrus	brain
13	chr3:134852400-134858000	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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