Variant report

Variant	rs16842897
Chromosome Location	chr2:210308683-210308684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10490754	0.91[AFR][1000 genomes]
rs41526653	0.91[AFR][1000 genomes]
rs58692970	0.90[AFR][1000 genomes]
rs7567066	0.87[AFR][1000 genomes]
rs7569410	0.91[AFR][1000 genomes]
rs7608830	0.94[AFR][1000 genomes]
rs9679620	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1005298	chr2:210277791-210318067	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210298200-210309200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:210300400-210312400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:210303400-210308800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:210305000-210310400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:210306400-210310200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr2:210306600-210337000	Weak transcription	Aorta	Aorta
7	chr2:210306800-210309000	Enhancers	Fetal Brain Female	brain
8	chr2:210307400-210310400	Enhancers	NHEK	skin
9	chr2:210307400-210315400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:210307800-210309000	Weak transcription	Fetal Heart	heart
11	chr2:210308000-210309200	Enhancers	Fetal Kidney	kidney
12	chr2:210308400-210309800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:210308600-210310200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:210308600-210315000	Weak transcription	Brain Germinal Matrix	brain
15	chr2:210308600-210324200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links