Variant report

Variant	rs16843029
Chromosome Location	chr3:135209977-135209978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58194709	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58701539	0.81[AFR][1000 genomes]
rs60843403	0.86[AFR][1000 genomes]
rs72987539	0.86[AFR][1000 genomes]
rs72987540	0.81[AFR][1000 genomes]
rs72987558	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72987563	0.86[AFR][1000 genomes]
rs7610973	0.81[AFR][1000 genomes]
rs7614390	0.86[AFR][1000 genomes]
rs7652797	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135206400-135214400	Weak transcription	Spleen	Spleen
2	chr3:135209000-135210000	Enhancers	Psoas Muscle	Psoas
3	chr3:135209000-135210200	Enhancers	Fetal Brain Male	brain
4	chr3:135209600-135210600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:135209600-135211600	Weak transcription	Fetal Brain Female	brain
6	chr3:135209800-135210200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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