Variant report

Variant	rs16843205
Chromosome Location	chr3:100789979-100789980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100788987..100791271-chr3:100835784..100837518,2	K562	blood:
2	chr3:100788848..100789981-chr3:100914652..100915586,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13084328	0.92[EUR][1000 genomes]
rs13084743	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13086306	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1375513	0.81[ASN][1000 genomes]
rs1584481	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16843187	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1823360	0.81[ASN][1000 genomes]
rs1900909	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2053861	0.81[ASN][1000 genomes]
rs34109547	0.92[EUR][1000 genomes]
rs4928107	0.80[EUR][1000 genomes]
rs71315221	0.80[EUR][1000 genomes]
rs969628	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv591176	chr3:100763611-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv591177	chr3:100767398-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100786000-100791000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:100786000-100791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:100787800-100791400	Enhancers	A549	lung
4	chr3:100787800-100791400	Enhancers	HUVEC	blood vessel
5	chr3:100787800-100792200	Enhancers	Hela-S3	cervix
6	chr3:100788000-100791800	Enhancers	Fetal Intestine Large	intestine
7	chr3:100788200-100790800	Weak transcription	NHEK	skin
8	chr3:100788200-100791600	Enhancers	Fetal Intestine Small	intestine
9	chr3:100788400-100791000	Enhancers	Small Intestine	intestine
10	chr3:100788800-100790400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr3:100789000-100790000	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr3:100789000-100791600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:100789000-100792200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:100789200-100791200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:100789200-100791200	Weak transcription	NH-A	brain
16	chr3:100789200-100800800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:100789400-100790800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:100789400-100790800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:100789400-100790800	Weak transcription	HMEC	breast
20	chr3:100789400-100791200	Weak transcription	NHLF	lung
21	chr3:100789600-100790000	Enhancers	Duodenum Mucosa	Duodenum
22	chr3:100789600-100790800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:100789600-100791000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr3:100789600-100791200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:100789600-100791200	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:100789600-100791200	Weak transcription	Osteobl	bone
27	chr3:100789800-100790000	Flanking Active TSS	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links