Variant report

Variant	rs16844449
Chromosome Location	chr2:141426714-141426715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12993417	0.82[ASN][1000 genomes]
rs16844420	0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16844424	0.83[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs16844426	0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16844428	0.83[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs16844433	0.84[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs16844439	0.83[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs16844441	1.00[ASW][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];0.97[LWK][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes]
rs16844442	1.00[ASW][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];0.97[LWK][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs16844443	0.84[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16844445	0.84[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes]
rs16844450	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap]
rs16844451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs6711580	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs6739610	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875195	chr2:141407101-141542081	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv583194	chr2:141409166-141471725	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875196	chr2:141409166-141471725	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875197	chr2:141409166-141478468	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv875198	chr2:141409166-141571329	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv583195	chr2:141415043-141466384	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv583196	chr2:141426714-141487897	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16844449	RAVER2	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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