Variant report

Variant	rs16844843
Chromosome Location	chr2:211582773-211582774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10932349	0.85[CEU][hapmap]
rs16824971	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16844859	0.96[EUR][1000 genomes]
rs2058924	0.80[EUR][1000 genomes]
rs6435583	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66677885	0.89[EUR][1000 genomes]
rs6748782	1.00[CEU][hapmap]
rs6749137	1.00[CEU][hapmap]
rs72933856	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72933857	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72933861	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939798	0.89[EUR][1000 genomes]
rs72944165	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72944185	0.92[EUR][1000 genomes]
rs764637	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1013658	chr2:211447246-211809945	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536135	chr2:211447246-211809945	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536136	chr2:211497528-211830019	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv821631	chr2:211528918-211658981	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211562800-211587600	Weak transcription	Liver	Liver
2	chr2:211581600-211584600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:211581600-211584800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:211581800-211583800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:211582000-211583800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:211582000-211583800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:211582000-211584800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:211582400-211582800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr2:211582400-211583200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr2:211582400-211583400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:211582400-211583600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:211582400-211583800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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