Variant report

Variant	rs16844873
Chromosome Location	chr2:141595824-141595825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12691566	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12691568	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs12691569	0.83[JPT][hapmap]
rs1429354	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1486124	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs16844793	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2380897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs35591904	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141593800-141597800	Weak transcription	Primary T cells from cord blood	blood
2	chr2:141594200-141597800	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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