Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs166316	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684480	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684483	1.00[ASN][1000 genomes]
rs192316	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259480	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259481	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259512	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259516	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259519	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259536	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259539	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259540	1.00[ASN][1000 genomes]
rs2630813	1.00[ASN][1000 genomes]
rs473544	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524531	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527138	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534330	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565135	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs569088	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634523	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644091	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674639	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531535	chr8:134505432-135334451	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv612331	chr8:134690652-135304781	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3418453	chr8:134705837-135054196	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3330571	chr8:134876616-135682911	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:135031800-135042800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:135036800-135042800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr8:135038200-135044800	Weak transcription	Fetal Brain Male	brain
4	chr8:135040200-135045400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:135040400-135046600	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search: