Variant report

Variant	rs16844989
Chromosome Location	chr1:172787588-172787589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172786300..172787815-chr1:172791310..172794035,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947450	chr1:172786009-172789082	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3388842	chr1:172787465-172787732	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172785400-172788400	Weak transcription	HSMMtube	muscle
2	chr1:172786400-172789400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:172786600-172788000	Enhancers	Primary B cells from cord blood	blood
4	chr1:172786600-172788400	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:172786800-172788000	Flanking Active TSS	GM12878-XiMat	blood
6	chr1:172786800-172788200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:172786800-172789400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:172787000-172788200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:172787000-172789200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:172787200-172787600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:172787200-172787800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr1:172787200-172788000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:172787200-172788600	Enhancers	Adipose Nuclei	Adipose
14	chr1:172787400-172788000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr1:172787400-172788000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:172787400-172788000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:172787400-172788600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:172787400-172789000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:172787400-172789000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:172787400-172789400	Enhancers	Primary hematopoietic stem cells	blood
21	chr1:172787400-172793800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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