Variant report

Variant	rs16845001
Chromosome Location	chr3:110462950-110462951
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110457222..110459502-chr3:110460960..110463894,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10934063	0.90[ASN][1000 genomes]
rs10934064	0.90[ASN][1000 genomes]
rs11925026	0.93[ASN][1000 genomes]
rs12053901	0.93[ASN][1000 genomes]
rs1462295	0.93[ASN][1000 genomes]
rs1462306	0.80[ASN][1000 genomes]
rs57198450	0.89[ASN][1000 genomes]
rs59612531	0.89[ASN][1000 genomes]
rs60302938	0.93[ASN][1000 genomes]
rs62270083	0.82[ASN][1000 genomes]
rs62270086	0.82[ASN][1000 genomes]
rs62270095	0.85[ASN][1000 genomes]
rs62270100	0.85[ASN][1000 genomes]
rs62270121	0.88[ASN][1000 genomes]
rs62270122	0.88[ASN][1000 genomes]
rs62270123	0.88[ASN][1000 genomes]
rs62270124	0.89[ASN][1000 genomes]
rs62270127	0.90[ASN][1000 genomes]
rs62270128	0.85[ASN][1000 genomes]
rs62270129	0.84[ASN][1000 genomes]
rs62270130	0.90[ASN][1000 genomes]
rs62270134	0.92[ASN][1000 genomes]
rs62271763	0.92[ASN][1000 genomes]
rs62271766	0.93[ASN][1000 genomes]
rs62271784	0.93[ASN][1000 genomes]
rs62271785	0.93[ASN][1000 genomes]
rs62271788	0.95[ASN][1000 genomes]
rs62271789	0.95[ASN][1000 genomes]
rs6772035	0.92[ASN][1000 genomes]
rs6776067	0.89[ASN][1000 genomes]
rs7609852	0.95[ASN][1000 genomes]
rs7618299	0.83[ASN][1000 genomes]
rs7629179	0.95[ASN][1000 genomes]
rs7632974	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7634536	0.90[ASN][1000 genomes]
rs7640442	0.81[ASN][1000 genomes]
rs7641379	0.95[ASN][1000 genomes]
rs7650722	0.93[ASN][1000 genomes]
rs9825259	0.83[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs9858359	0.92[ASN][1000 genomes]
rs9873714	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv829673	chr3:110378069-110530815	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110460800-110464000	Enhancers	Fetal Intestine Large	intestine
2	chr3:110462000-110463600	Enhancers	Duodenum Mucosa	Duodenum
3	chr3:110462000-110463600	Enhancers	Fetal Intestine Small	intestine
4	chr3:110462000-110463600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr3:110462200-110464000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr3:110462600-110463800	Weak transcription	Stomach Mucosa	stomach
7	chr3:110462600-110468000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:110462800-110463200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:110462800-110467000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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