Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172937098..172937996-chr20:22890442..22890942,2	MCF-7	breast:
2	chr1:172935873..172938818-chr1:172941293..172944064,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12122161	1.00[CHB][hapmap]
rs972100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172929800-172938200	Weak transcription	HSMMtube	muscle
2	chr1:172935400-172937400	Enhancers	HUVEC	blood vessel
3	chr1:172935400-172938000	Enhancers	HMEC	breast
4	chr1:172935800-172937600	Enhancers	NH-A	brain
5	chr1:172935800-172937600	Enhancers	NHEK	skin
6	chr1:172935800-172938800	Enhancers	A549	lung
7	chr1:172935800-172939800	Enhancers	NHLF	lung
8	chr1:172935800-172940600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:172935800-172940600	Enhancers	HSMM	muscle
10	chr1:172936000-172937400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:172936000-172937400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:172936000-172937400	Enhancers	Osteobl	bone
13	chr1:172936000-172937600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:172936000-172938000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:172936000-172941200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:172936200-172944800	Weak transcription	Stomach Mucosa	stomach
17	chr1:172936400-172937600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:172936400-172941800	Enhancers	NHDF-Ad	bronchial
19	chr1:172936800-172938800	Weak transcription	Hela-S3	cervix
20	chr1:172937200-172937400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:172937200-172937400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:172937200-172941000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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