Variant report

Variant	rs16845233
Chromosome Location	chr2:141813216-141813217
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141785789..141788273-chr2:141812722..141815557,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10167630	0.86[JPT][hapmap]
rs10168120	1.00[JPT][hapmap]
rs10190133	1.00[JPT][hapmap]
rs10496866	1.00[JPT][hapmap]
rs10496867	1.00[JPT][hapmap]
rs12464862	1.00[JPT][hapmap]
rs12477423	1.00[JPT][hapmap];0.89[MEX][hapmap]
rs1357966	1.00[JPT][hapmap]
rs1404890	1.00[AFR][1000 genomes]
rs1404891	1.00[AFR][1000 genomes]
rs1473661	1.00[JPT][hapmap]
rs1473663	1.00[JPT][hapmap]
rs1525583	1.00[JPT][hapmap]
rs1525584	1.00[JPT][hapmap]
rs1525585	1.00[JPT][hapmap]
rs1525588	1.00[JPT][hapmap]
rs1534128	1.00[JPT][hapmap]
rs16845274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1882638	0.80[MEX][hapmap]
rs1882643	1.00[JPT][hapmap]
rs1882644	1.00[JPT][hapmap]
rs1917702	1.00[JPT][hapmap]
rs2049478	1.00[JPT][hapmap]
rs2049479	0.84[JPT][hapmap]
rs2140871	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2140872	1.00[JPT][hapmap]
rs3845638	0.84[JPT][hapmap]
rs3856355	0.86[JPT][hapmap]
rs3856358	0.86[JPT][hapmap]
rs4954689	1.00[JPT][hapmap]
rs4954690	1.00[JPT][hapmap]
rs4954880	0.86[JPT][hapmap]
rs7575215	0.84[JPT][hapmap]
rs7601662	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv875210	chr2:141764693-141818657	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875211	chr2:141764693-141846346	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv875212	chr2:141796109-141877201	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv875213	chr2:141800473-141852429	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv875214	chr2:141800473-141866271	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv875215	chr2:141800473-141877201	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv875216	chr2:141800473-141905052	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv875217	chr2:141800473-141919943	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv875218	chr2:141800473-141925845	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv875219	chr2:141803602-141877201	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv459563	chr2:141803602-141925075	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv583200	chr2:141803602-141925075	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141807400-141818600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:141807400-141819200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:141812400-141814200	Enhancers	HUVEC	blood vessel
4	chr2:141812600-141813600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:141812800-141813600	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links