Variant report

Variant	rs16845420
Chromosome Location	chr1:173065886-173065887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73034147	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034151	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173062400-173066600	Enhancers	NHDF-Ad	bronchial
2	chr1:173062600-173066400	Enhancers	HMEC	breast
3	chr1:173063000-173066400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:173063200-173066000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:173063800-173066200	Enhancers	HSMM	muscle
6	chr1:173064000-173066400	Enhancers	Osteobl	bone
7	chr1:173064200-173066400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:173064200-173066600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:173064400-173066200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:173064400-173066400	Enhancers	HSMMtube	muscle
11	chr1:173064400-173066600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:173064600-173066400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:173064600-173066400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:173064600-173066400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:173065200-173066000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:173065200-173069800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:173065400-173066200	Weak transcription	NHLF	lung
18	chr1:173065800-173066200	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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