Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10171947	0.81[CEU][hapmap]
rs10179688	0.91[CEU][hapmap]
rs10194319	0.92[CEU][hapmap]
rs10496869	0.92[CEU][hapmap]
rs11677400	0.92[CEU][hapmap]
rs1249426	0.83[JPT][hapmap]
rs13395175	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13396738	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13418958	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1401310	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1401313	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs17592904	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs1850697	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2380966	0.92[CEU][hapmap]
rs389518	0.86[CHB][hapmap]
rs4954894	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6711588	0.81[JPT][hapmap]
rs6715585	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6730244	0.87[CEU][hapmap]
rs6757044	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs971251	0.92[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005236	chr2:141860005-142047695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv535948	chr2:141860005-142047695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141951800-141953800	Enhancers	Dnd41	blood
2	chr2:141952800-141953400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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