Variant report

Variant	rs16846058
Chromosome Location	chr1:226707616-226707617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226707495..226708460-chr1:226737616..226738711,3	MCF-7	breast:
2	chr1:226706839..226711450-chr1:226711635..226715756,5	MCF-7	breast:
3	chr1:226706806..226709403-chr1:226713996..226717525,3	K562	blood:
4	chr1:226706711..226708854-chr1:226787802..226789372,2	K562	blood:
5	chr1:226706806..226710150-chr1:226713996..226716471,3	K562	blood:

Variant related genes	Relation type
ENSG00000203685	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58528842	1.00[EUR][1000 genomes]
rs60718314	0.82[AFR][1000 genomes]
rs73095702	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832781	chr1:226570901-226750697	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226706800-226710400	Enhancers	Fetal Muscle Leg	muscle
2	chr1:226707000-226707800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr1:226707000-226707800	Enhancers	Duodenum Mucosa	Duodenum
4	chr1:226707000-226708000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:226707000-226708400	Enhancers	Brain Anterior Caudate	brain
6	chr1:226707000-226708400	Enhancers	Right Ventricle	heart
7	chr1:226707000-226708600	Enhancers	Fetal Muscle Trunk	muscle
8	chr1:226707000-226708600	Enhancers	Left Ventricle	heart
9	chr1:226707000-226708800	Enhancers	Fetal Heart	heart
10	chr1:226707000-226709000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:226707000-226709000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:226707200-226708000	Enhancers	Brain Hippocampus Middle	brain
13	chr1:226707200-226708800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr1:226707200-226709000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr1:226707400-226707800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:226707400-226708400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:226707400-226708400	Enhancers	Brain Substantia Nigra	brain
18	chr1:226707400-226708800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr1:226707400-226708800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr1:226707400-226709000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:226707400-226709200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
22	chr1:226707400-226709200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr1:226707600-226707800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
24	chr1:226707600-226707800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:226707600-226708000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
26	chr1:226707600-226708000	Enhancers	Right Atrium	heart
27	chr1:226707600-226708200	Enhancers	Spleen	Spleen
28	chr1:226707600-226708400	Enhancers	Brain Cingulate Gyrus	brain
29	chr1:226707600-226708600	Enhancers	Psoas Muscle	Psoas
30	chr1:226707600-226708800	Enhancers	HSMMtube	muscle
31	chr1:226707600-226709200	Enhancers	HUES48 Cell Line	embryonic stem cell

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