Variant report

Variant	rs16846139
Chromosome Location	chr1:226757186-226757187
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226750351..226752468-chr1:226756238..226759010,2	MCF-7	breast:
2	chr1:226755240..226758570-chr1:226759106..226763916,5	K562	blood:
3	chr1:226553215..226554821-chr1:226756325..226758974,2	MCF-7	breast:
4	chr1:226752510..226754783-chr1:226756256..226757834,2	MCF-7	breast:

rs_ID	r²[population]
rs16846137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226750000-226763200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:226751800-226758600	Enhancers	Colon Smooth Muscle	Colon
3	chr1:226753000-226758600	Enhancers	Fetal Brain Male	brain
4	chr1:226753800-226758400	Enhancers	Rectal Smooth Muscle	rectum
5	chr1:226754600-226758400	Enhancers	Fetal Muscle Leg	muscle
6	chr1:226755000-226757200	Enhancers	Fetal Brain Female	brain
7	chr1:226755200-226757400	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr1:226755400-226757200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:226755600-226757200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:226755600-226757200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr1:226755600-226758200	Enhancers	HSMMtube	muscle
12	chr1:226755600-226762800	Weak transcription	Brain Germinal Matrix	brain
13	chr1:226756200-226762000	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:226756200-226762600	Weak transcription	Right Atrium	heart
15	chr1:226756400-226758400	Enhancers	Fetal Muscle Trunk	muscle
16	chr1:226756600-226757600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:226756600-226757800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr1:226756600-226758000	Weak transcription	Placenta	Placenta
19	chr1:226756600-226758400	Enhancers	Stomach Smooth Muscle	stomach
20	chr1:226756600-226762400	Weak transcription	Right Ventricle	heart
21	chr1:226756600-226762800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr1:226756600-226764400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:226756600-226764600	Weak transcription	Brain Substantia Nigra	brain
24	chr1:226756600-226764800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:226756800-226757200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr1:226756800-226757200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:226756800-226757200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr1:226756800-226757400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:226756800-226757800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr1:226756800-226758000	Weak transcription	Brain Angular Gyrus	brain
31	chr1:226756800-226758200	Weak transcription	Brain Anterior Caudate	brain
32	chr1:226756800-226762200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:226757000-226757400	Weak transcription	Fetal Stomach	stomach

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