Variant report

Variant	rs16846144
Chromosome Location	chr2:212294482-212294483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16825003	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16846004	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846022	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846111	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16846114	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17334585	1.00[ASN][1000 genomes]
rs17803759	1.00[ASN][1000 genomes]
rs17803801	1.00[ASN][1000 genomes]
rs55986170	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875777	chr2:212274937-212295875	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv520702	chr2:212292521-212299979	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212279400-212294600	Weak transcription	Fetal Heart	heart
2	chr2:212281600-212301200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:212287000-212295400	Weak transcription	HUVEC	blood vessel
4	chr2:212288200-212302400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:212294000-212294800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:212294200-212294600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:212294200-212294600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:212294200-212294600	Enhancers	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links