Variant report

Variant	rs16846618
Chromosome Location	chr3:103423534-103423535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12495902	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17527920	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28574944	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4856084	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56284974	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7629646	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7640687	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9850389	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9852111	0.81[EUR][1000 genomes]
rs9852579	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948426	chr3:103046716-103952548	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv949251	chr3:103046716-103977037	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv527886	chr3:103048891-103989893	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877250	chr3:103372647-103450591	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999258	chr3:103393334-103435944	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv591202	chr3:103394499-103487522	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv877251	chr3:103408208-103747624	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103423200-103424800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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