Variant report

Variant	rs16847213
Chromosome Location	chr2:212793611-212793612
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16847686	1.00[AMR][1000 genomes]
rs73989226	1.00[AMR][1000 genomes]
rs7590747	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212788400-212795000	Weak transcription	Fetal Heart	heart
2	chr2:212791600-212794400	Enhancers	Brain Substantia Nigra	brain
3	chr2:212791600-212800200	Weak transcription	Aorta	Aorta
4	chr2:212792200-212796600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:212792200-212796800	Enhancers	Dnd41	blood
6	chr2:212792400-212794000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:212792600-212796400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:212792800-212794400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:212792800-212794400	Enhancers	Thymus	Thymus
10	chr2:212793000-212794400	Enhancers	Fetal Thymus	thymus
11	chr2:212793200-212793800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:212793400-212794200	Enhancers	Brain Anterior Caudate	brain
13	chr2:212793600-212793800	Bivalent Enhancer	Brain Germinal Matrix	brain
14	chr2:212793600-212794000	Enhancers	Brain Hippocampus Middle	brain
15	chr2:212793600-212794600	Weak transcription	Primary T cells from cord blood	blood
16	chr2:212793600-212794800	Weak transcription	Brain Angular Gyrus	brain
17	chr2:212793600-212796200	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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