Variant report

Variant	rs16847214
Chromosome Location	chr2:212793858-212793859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17336280	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4292044	1.00[ASN][1000 genomes]
rs7608264	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212788400-212795000	Weak transcription	Fetal Heart	heart
2	chr2:212791600-212794400	Enhancers	Brain Substantia Nigra	brain
3	chr2:212791600-212800200	Weak transcription	Aorta	Aorta
4	chr2:212792200-212796600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:212792200-212796800	Enhancers	Dnd41	blood
6	chr2:212792400-212794000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:212792600-212796400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:212792800-212794400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:212792800-212794400	Enhancers	Thymus	Thymus
10	chr2:212793000-212794400	Enhancers	Fetal Thymus	thymus
11	chr2:212793400-212794200	Enhancers	Brain Anterior Caudate	brain
12	chr2:212793600-212794000	Enhancers	Brain Hippocampus Middle	brain
13	chr2:212793600-212794600	Weak transcription	Primary T cells from cord blood	blood
14	chr2:212793600-212794800	Weak transcription	Brain Angular Gyrus	brain
15	chr2:212793600-212796200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:212793800-212794000	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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