The 2.0 version of rSNPBase

Variant report

Variant rs16847223
Chromosome Location chr3:159578542-159578543
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:159571200-159579200 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr3:159571400-159580200 Enhancers Cortex derived primary cultured neurospheres brain
3 chr3:159572000-159582800 Weak transcription Placenta Amnion Placenta Amnion
4 chr3:159572400-159580400 Enhancers Primary hematopoietic stem cells blood
5 chr3:159572400-159589400 Weak transcription iPS-20b Cell Line embryonic stem cell
6 chr3:159572800-159579000 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr3:159573000-159580200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
8 chr3:159573000-159580600 Enhancers Colon Smooth Muscle Colon
9 chr3:159573400-159580400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
10 chr3:159573400-159582600 Enhancers Fetal Brain Male brain
11 chr3:159573800-159579400 Enhancers Lung lung
12 chr3:159573800-159579600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr3:159574000-159582800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr3:159574200-159578600 Weak transcription Placenta Placenta
15 chr3:159574200-159582800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr3:159574600-159580200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr3:159574600-159580400 Enhancers HUVEC blood vessel
18 chr3:159574800-159578600 Weak transcription Monocytes-CD14+_RO01746 blood
19 chr3:159574800-159579000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
20 chr3:159574800-159579200 Enhancers Primary hematopoietic stem cells short term culture blood
21 chr3:159574800-159579800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
22 chr3:159574800-159584800 Enhancers Brain Angular Gyrus brain
23 chr3:159574800-159586200 Weak transcription Ovary ovary
24 chr3:159575000-159578600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr3:159575000-159580400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr3:159575000-159580800 Enhancers Rectal Smooth Muscle rectum
27 chr3:159575200-159578800 Weak transcription Primary B cells from cord blood blood
28 chr3:159575200-159579400 Enhancers Brain Germinal Matrix brain
29 chr3:159575200-159580200 Enhancers Breast Myoepithelial Primary Cells Breast
30 chr3:159575200-159580400 Enhancers Brain Anterior Caudate brain
31 chr3:159575400-159580400 Enhancers HMEC breast
32 chr3:159575800-159580000 Enhancers Psoas Muscle Psoas
33 chr3:159575800-159580200 Enhancers NHEK skin
34 chr3:159576000-159579600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr3:159576000-159580200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr3:159576200-159581800 Weak transcription A549 lung
37 chr3:159576400-159578600 Weak transcription Fetal Intestine Small intestine
38 chr3:159576400-159579200 Weak transcription Aorta Aorta
39 chr3:159576600-159579800 Enhancers Left Ventricle heart
40 chr3:159576800-159579400 Enhancers Stomach Smooth Muscle stomach
41 chr3:159576800-159579800 Enhancers Right Atrium heart
42 chr3:159576800-159584200 Enhancers Fetal Heart heart
43 chr3:159577000-159578800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr3:159577000-159581000 Enhancers Right Ventricle heart
45 chr3:159577200-159579400 Enhancers Adipose Nuclei Adipose
46 chr3:159577200-159579600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr3:159577200-159579600 Enhancers NHDF-Ad bronchial
48 chr3:159577200-159579800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
49 chr3:159577200-159579800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
50 chr3:159577200-159580800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015