Variant report

Variant	rs16848519
Chromosome Location	chr2:213281411-213281412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16848567	1.00[AMR][1000 genomes]
rs16848719	1.00[AMR][1000 genomes]
rs4273173	1.00[AMR][1000 genomes]
rs6435703	1.00[AMR][1000 genomes]
rs6435710	1.00[AMR][1000 genomes]
rs6727289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003694	chr2:213216431-213290523	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2763101	chr2:213248318-213290535	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213278800-213281600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:213279200-213281600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:213279600-213283000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:213280000-213284800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:213280200-213282600	Weak transcription	Brain Substantia Nigra	brain
6	chr2:213280600-213281600	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr2:213281000-213281800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:213281000-213285200	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:213281200-213282400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:213281400-213281600	Flanking Active TSS	Brain Angular Gyrus	brain
11	chr2:213281400-213281600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
12	chr2:213281400-213281600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links