Variant report

Variant	rs16848661
Chromosome Location	chr2:213343095-213343096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10497974	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1384289	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16848640	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16848646	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs59744201	1.00[EUR][1000 genomes]
rs6752299	0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs73062337	1.00[EUR][1000 genomes]
rs73062343	1.00[EUR][1000 genomes]
rs73063148	1.00[EUR][1000 genomes]
rs73063156	1.00[EUR][1000 genomes]
rs73063158	1.00[EUR][1000 genomes]
rs73063161	1.00[EUR][1000 genomes]
rs73063172	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213342400-213343600	Weak transcription	Fetal Brain Female	brain
2	chr2:213342600-213343400	Weak transcription	Fetal Heart	heart
3	chr2:213342800-213344000	Weak transcription	Fetal Brain Male	brain
4	chr2:213342800-213345400	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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