Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138663376..138665458-chr3:138892996..138895666,2	K562	blood:

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11706018	0.95[EUR][1000 genomes]
rs11710314	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11719196	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16848873	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55683392	0.88[EUR][1000 genomes]
rs6765432	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7628263	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7628289	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7638110	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138892200-138893400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:138892200-138893400	Active TSS	Brain Cingulate Gyrus	brain
3	chr3:138892200-138893600	Active TSS	Brain Substantia Nigra	brain
4	chr3:138892400-138893400	Active TSS	NHDF-Ad	bronchial
5	chr3:138892600-138893400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:138892800-138893400	Active TSS	A549	lung
7	chr3:138893000-138893400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:138893000-138893400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:138893000-138893400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:138893000-138893400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:138893000-138893400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:138893000-138893400	Enhancers	Fetal Kidney	kidney
13	chr3:138893000-138894000	Enhancers	Brain Germinal Matrix	brain
14	chr3:138893000-138894600	Weak transcription	Ovary	ovary
15	chr3:138893200-138893400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:138893200-138893400	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr3:138893200-138893400	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr3:138893200-138893400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:138893200-138893400	Enhancers	Hela-S3	cervix
20	chr3:138893200-138893800	Enhancers	Brain Angular Gyrus	brain

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