Variant report

Variant	rs16849125
Chromosome Location	chr2:213578359-213578360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16849118	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7571818	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460093	chr2:213563072-213610359	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv584426	chr2:213563072-213610359	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213576000-213579000	Enhancers	HMEC	breast
2	chr2:213576000-213579200	Enhancers	NHEK	skin
3	chr2:213576800-213578800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:213577000-213579000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:213577000-213579200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:213577200-213579200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:213577600-213578800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:213578200-213578600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:213578200-213578800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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